Structure of PDB 5vrb Chain A

Receptor sequence
>5vrbA (length=627) Species: 521006 (Neisseria gonorrhoeae NCCP11945) [Search protein sequence]
SQLANVIRFLSADAVQKANSGHPGAPMGMAEMAETLWTKFLNHNPANPKF
YNRDRFVLSNGHASMLLYSLLHLTGYNLSIEDLKNFRQLHSKTPGHPEYG
YTDGVETTTGPLGQGIANAVGMALAEKILAAEFNKDGLNIVDHYTYVFMG
DGCLMEGVSHEACSLAGTLGLGKLIVLYDDNNIGWFTENIPQRFESYGWH
VVPNVNGHDTAAIQTAIEAARAETGKPSIICCKTLEATRKHLGWAYPAFE
IPQEIYDAWNAKEKGAKLEAGWNELFAQYQAKYPAEAAEFVRRMDKKLPE
NFDEYVQTALKEVCAKAETVATRKASQNSIEILAKELPELVGGSADLTPS
NLTDWSNSVSVTRDKGGNYIHYGVREFGMGAIMNGLVLHGGVKPFGATFL
MFSEYERNALRMAALMKINPVFVFTHDSIGLGEDGPTHQPIEQTATLRLI
PNMDVWRPCDTAESLVAWAEAAKAEDHPSCLIFSRQNLKFQARSEQQLND
IKRGAYVISEAQGNAQAVIIATGSEVGLAVEAQKVLAGQGIAVRVVSMPS
TSVFDRQDAAYQAAVLPEGLPRIAVEAGHTNGWYKYVGLNGAVVGINRFG
ESAPADLLFKAFGFTVDNVVDTVKSVL
3D structure
PDB5vrb Crystal structure of a transketolase from Neisseria gonorrhoeae
ChainA
Resolution1.85 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) H23 E408 Y437 H470
Catalytic site (residue number reindexed from 1) H22 E376 Y405 H438
Enzyme Commision number 2.2.1.1: transketolase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A D152 N182 N183 D151 N181 N182
BS02 CA A G151 D152 G153 C154 G150 D151 G152 C153
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004802 transketolase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006098 pentose-phosphate shunt
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5vrb, PDBe:5vrb, PDBj:5vrb
PDBsum5vrb
PubMed
UniProtB4RKU9

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