Structure of PDB 5vcn Chain A

Receptor sequence
>5vcnA (length=222) Species: 6956 (Dermatophagoides pteronyssinus) [Search protein sequence]
TNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAY
RNQSLDLAEQELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVARE
QSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAF
RHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNG
YGYFAANIDLMMIEEYPYVVIL
3D structure
PDB5vcn Structural Analysis of Der p 1-Antibody Complexes and Comparison with Complexes of Proteins or Peptides with Monoclonal Antibodies.
ChainA
Resolution3.0 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) Q28 C34 H170 N190
Catalytic site (residue number reindexed from 1) Q28 C34 H170 N190
Enzyme Commision number 3.4.22.65: peptidase 1 (mite).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A R26 D56 L57 E59 E91 R26 D56 L57 E59 E91
Gene Ontology
Molecular Function
GO:0008234 cysteine-type peptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:5vcn, PDBe:5vcn, PDBj:5vcn
PDBsum5vcn
PubMed26026055
UniProtP08176|PEPT1_DERPT Peptidase 1 (Gene Name=DERP1)

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