Structure of PDB 5va4 Chain A

Receptor sequence
>5va4A (length=123) Species: 9505,262724 [Search protein sequence]
DHCAHHGEKLVLFCQQDGNVICWLCERSQEHRGHQTFLVEEVAQKYREKL
QVALEMMRQKQKDAETECNQVAKRVALIARGKACGEQTQSVRVLISDLEH
RLQGSVMELLQGVDGVIKRIEKV
3D structure
PDB5va4 General Model for Retroviral Capsid Pattern Recognition by TRIM5 Proteins.
ChainA
Resolution2.306 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) K220
Catalytic site (residue number reindexed from 1) K118
Enzyme Commision number 5.2.1.8: peptidylprolyl isomerase.
6.1.1.11: serine--tRNA ligase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A C107 D110 H124 H127 C14 D17 H31 H34
BS02 ZN A C96 H99 C115 C118 C3 H6 C22 C25
BS03 ZN A E158 C161 E65 C68
Gene Ontology
Molecular Function
GO:0008270 zinc ion binding

View graph for
Molecular Function
External links
PDB RCSB:5va4, PDBe:5va4, PDBj:5va4
PDBsum5va4
PubMed29187540
UniProtP34945|SYS_THET2 Serine--tRNA ligase (Gene Name=serS);
Q68KK2

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