Structure of PDB 5v6x Chain A

Receptor sequence
>5v6xA (length=84) Species: 192952 (Methanosarcina mazei Go1) [Search protein sequence]
NNKPLNTLISATGLWMSRTGTIHKIKHHEVSRSKIYIEMACGDHLVVNNS
RSSRPARALRYHKYRKTCKRCRVSDEDLNKFLTK
3D structure
PDB5v6x Crystal structures reveal an elusive functional domain of pyrrolysyl-tRNA synthetase.
ChainA
Resolution2.76 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.1.1.26: pyrrolysine--tRNA(Pyl) ligase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A W16 S18 R19 T20 T22 H24 L46 N49 S51 R52 S53 S54 R55 P56 R58 Y62 K64 Y65 R66 W15 S17 R18 T19 T21 H23 L45 N48 S50 R51 S52 S53 R54 P55 R57 Y61 K63 Y64 R65
BS02 rna A K4 T8 V31 S32 R33 R52 K3 T7 V30 S31 R32 R51
BS03 ZN A H24 C42 C69 H23 C41 C68
Gene Ontology
Molecular Function
GO:0004812 aminoacyl-tRNA ligase activity

View graph for
Molecular Function
External links
PDB RCSB:5v6x, PDBe:5v6x, PDBj:5v6x
PDBsum5v6x
PubMed29035363
UniProtQ8PWY1|PYLS_METMA Pyrrolysine--tRNA ligase (Gene Name=pylS)

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