Structure of PDB 5uj0 Chain A

Receptor sequence
>5uj0A (length=143) Species: 10665 (Tequatrovirus T4) [Search protein sequence]
SKPKAVIFDVDGTLAKMGRGPYDLEKCDTDVINPMVVELSKMYALMGYQI
VVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVV
KEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASGD
3D structure
PDB5uj0 Truncated T4Pnk covalently bound to BeF3
ChainA
Resolution2.3 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) D165
Catalytic site (residue number reindexed from 1) D9
Enzyme Commision number 2.7.1.78: polynucleotide 5'-hydroxyl-kinase.
3.1.3.34: deoxynucleotide 3'-phosphatase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG A X165 D167 D278 X9 D11 D121
Gene Ontology
Molecular Function
GO:0047846 deoxynucleotide 3'-phosphatase activity

View graph for
Molecular Function
External links
PDB RCSB:5uj0, PDBe:5uj0, PDBj:5uj0
PDBsum5uj0
PubMed
UniProtP06855|KIPN_BPT4 Polynucleotide kinase (Gene Name=pseT)

[Back to BioLiP]