Structure of PDB 5ub8 Chain A

Receptor sequence
>5ub8A (length=174) Species: 237561 (Candida albicans SC5314) [Search protein sequence]
YSYDYEYLYKIVLIGDSGVGKSNLLSRFTRDEFNLEGVEFATRTLEIDGK
RVKAQIWDTAGQERYRAITSAYYRGAVGALIVYDIAKTESYESVSRWLKE
LKEHADANIIIELVGNKSDLDHLRAVPTEEAKNFAMENNLLFTEASALSS
DNVDLSFHQLLKNIYEMISKHQLE
3D structure
PDB5ub8 Crystal structure of YPT31, a Rab family GTPase from Candida albicans, in complex with GDP and Zn(II)
ChainA
Resolution2.35 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GDP A G25 V26 G27 K28 S29 N30 F40 N41 E43 N128 K129 D131 L132 S158 A159 L160 G18 V19 G20 K21 S22 N23 F33 N34 E36 N116 K117 D119 L120 S146 A147 L148
BS02 ZN A E112 H116 E100 H104
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005525 GTP binding
GO:0046872 metal ion binding
Biological Process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006887 exocytosis
GO:0042273 ribosomal large subunit biogenesis
Cellular Component
GO:0005794 Golgi apparatus
GO:0031521 spitzenkorper
GO:0055037 recycling endosome
GO:1903561 extracellular vesicle

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5ub8, PDBe:5ub8, PDBj:5ub8
PDBsum5ub8
PubMed
UniProtA0A1D8PTI2

[Back to BioLiP]