Structure of PDB 5tmd Chain A

Receptor sequence
>5tmdA (length=440) Species: 39947 (Oryza sativa Japonica Group) [Search protein sequence]
QVLLLPFPAAQGHTNPMLQFGRRLAYHGLRPTLVTTRYVLSTTPPPGDPF
RVAAISDGFDDASGMAALPDPGEYLRTLEAHGARTLAELLLSEARAGRPA
RVLVYDPHLPWARRVARAAGVATAAFLSQPCAVDLIYGEVCARRLALPVT
PTDARGLYARGVLGVELGPDDVPPFVAAPELTPAFCEQSIEQFAGLEDDD
DVLVNSFSDLEPKEAAYMESTWRAKTIGPSLPSFYLDDGRFRSTVPCMEW
LDKQPPRSVVLVSYGTVSTFDVAKLEELGNGLCNSGKPFLWVVRSNEEHK
LSVQLRKKCEKRGLIVPFCPQLEVLAHKATGCFLSHCGWNSTLEAIVNGV
PLVAMPHWADQPTISKYVESLWGMGVRVQLDKSGILQREEVERCIREVMD
GDRKEDYRRNATRLMKKAKESMQEGGSSDKNIAEFAAKYS
3D structure
PDB5tmd Crystal Structure of Os79 (Os04g0206600) from Oryza sativa: A UDP-glucosyltransferase Involved in the Detoxification of Deoxynivalenol.
ChainA
Resolution2.19 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.4.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 U2F A G26 H27 Q143 F343 C344 Q346 H361 G363 W364 N365 S366 E369 D385 Q386 G12 H13 Q129 F318 C319 Q321 H336 G338 W339 N340 S341 E344 D360 Q361
BS02 7E0 A H27 F199 Q202 H13 F185 Q188
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0008194 UDP-glycosyltransferase activity
GO:0016757 glycosyltransferase activity
GO:0080043 quercetin 3-O-glucosyltransferase activity
GO:0080044 quercetin 7-O-glucosyltransferase activity
Biological Process
GO:0009636 response to toxic substance
GO:0098754 detoxification
Cellular Component
GO:0005737 cytoplasm

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Biological Process
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Cellular Component
External links
PDB RCSB:5tmd, PDBe:5tmd, PDBj:5tmd
PDBsum5tmd
PubMed27715009
UniProtQ7XT97|UGT79_ORYSJ UDP-glycosyltransferase 79 (Gene Name=UGT79)

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