Structure of PDB 5tip Chain A

Receptor sequence
>5tipA (length=436) Species: 10506 (Paramecium bursaria Chlorella virus 1) [Search protein sequence]
AGGLSQLVAYGAQDVYLTGNPQITFFKTVYRRYTNFAIESIQQTINGSVG
FGNKVSTQISRNGDLITDIVVEFVLTKGGNGGTTYYPAEELLQDVELEIG
GQRIDKHYNDWFRTYDALFRMNDDRYNYRRMTDWVNNELVGAQKRFYVPL
IFFFNQTPGLALPLIALQYHEVKLYFTLASQVQGVNYNGSSAIAGAAQPT
MSVWVDYIFLDTQERTRFAQLPHEYLIEQLQFTGSETATPSATTQASQNI
RLNFNHPTKYLAWNFNNPTNYGQYTALANIPGACSGAGTAAATVTTPDYG
NTGTYNEQLAVLDSAKIQLNGQDRFATRKGSYFNKVQPYQSIGGVTPAGV
YLYSFALKPAGRQPSGTCNFSRIDNATLSLTYKTCSIDATSPAAVLGNTE
TVTANTATLLTALNIYAKNYNVLRIMSGMGGLAYAN
3D structure
PDB5tip Structure of the chlorovirus PBCV-1 major capsid glycoprotein determined by combining crystallographic and carbohydrate molecular modeling approaches.
ChainA
Resolution2.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC A N280 G289 N279 G288
BS02 BGC A D299 N302 D298 N301
BS03 FUC A G82 N138 G81 N137
BS04 XYP A N81 G82 L140 N80 G81 L139
BS05 GLA A G83 S286 G287 D299 G82 S285 G286 D298
BS06 BGC A D389 N399 D388 N398
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
GO:0008289 lipid binding
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5tip, PDBe:5tip, PDBj:5tip
PDBsum5tip
PubMed29255015
UniProtP30328|MCP_PBCV1 Major capsid protein (Gene Name=A430L)

[Back to BioLiP]