Structure of PDB 5tbp Chain A

Receptor sequence
>5tbpA (length=198) Species: 9606 (Homo sapiens) [Search protein sequence]
DPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIAS
FSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQM
DKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQP
GRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQ
3D structure
PDB5tbp Modulation of nongenomic activation of PI3K signalling by tetramerization of N-terminally-cleaved RXR alpha.
ChainA
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 7A4 A A272 Q275 L276 L301 R302 W305 A10 Q13 L14 L39 R40 W43 PDBbind-CN: -logKd/Ki=5.18,Kd=6.67uM
BindingDB: Kd=2380nM,IC50=2400nM
BS02 7A4 A A271 A272 Q275 R316 L326 A327 A9 A10 Q13 R54 L64 A65 PDBbind-CN: -logKd/Ki=5.18,Kd=6.67uM
BindingDB: Kd=2380nM,IC50=2400nM
BS03 7A4 A F439 I447 F177 I185 PDBbind-CN: -logKd/Ki=5.18,Kd=6.67uM
BindingDB: Kd=2380nM,IC50=2400nM
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003707 nuclear steroid receptor activity
GO:0008270 zinc ion binding
Biological Process
GO:0006355 regulation of DNA-templated transcription
Cellular Component
GO:0005634 nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5tbp, PDBe:5tbp, PDBj:5tbp
PDBsum5tbp
PubMed28714476
UniProtP19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha (Gene Name=RXRA)

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