Structure of PDB 5o80 Chain A

Receptor sequence
>5o80A (length=496) Species: 209285 (Thermochaetoides thermophila) [Search protein sequence]
KKARMTVDKDYKIAEIDKRIYGSFVEHLGRAVYDGLYQPGNSKSDEDGFR
KDVIELVKELNVPIIAYPGGNFVSNYFWEDGVGPVEDRPRRLDLAWKSIE
PNQVGINEFAKWCKKVNAEIMMAVNLGTRGISDACNLLEYCNHPGGSKYS
DMRIKHGVKEPHNIKVWCLGNEMDGPWQVGHKTMDEYGRIAEETARAMKM
IDPSIELVACGSSSKDMPTFPQWEATVLDYAYDYVDYISLHQYYGNKEND
TADFLAKSDDLDDFIRSVIATCDYIKAKKRSKKDIYLSFDEWNVWYHSNN
EDANIMQNEPWRIAPPLLEDIYTFEDALLVGLMLITLMKHADRIKIACLA
QLINVIAPIVTERNGGAAWRQTIFYPFMHASKYGRGIVLQPVINSPLHDT
SKHEDVTDIESVAIYNEEKEEVTIFAVNRNIHEDIVLVSDVRGMRLLEHI
VLEHQDLKIRNSVNGEEVYPKNSDKFDDGILTSMLRRASWNVIRIG
3D structure
PDB5o80 To be announced
ChainA
Resolution2.915 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.2.1.55: non-reducing end alpha-L-arabinofuranosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AHR A E27 N72 E292 Q352 E26 N71 E291 Q351
Gene Ontology
Molecular Function
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046556 alpha-L-arabinofuranosidase activity
Biological Process
GO:0000272 polysaccharide catabolic process
GO:0031222 arabinan catabolic process
GO:0046373 L-arabinose metabolic process
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5o80, PDBe:5o80, PDBj:5o80
PDBsum5o80
PubMed
UniProtA3DIH0|IABF_ACET2 Intracellular exo-alpha-(1->5)-L-arabinofuranosidase (Gene Name=Cthe_2548)

[Back to BioLiP]