Structure of PDB 5o3v Chain A

Receptor sequence
>5o3vA (length=716) Species: 39387 (Gypsophila vaccaria) [Search protein sequence]
SGFSKPLHYPPVRRDETVVDDYFGVKVADPYRWLEDPNSEETKEFVDNQE
KLANSVLEECELIDKFKQKIIDFVNFPRCGVPFRRANKYFHFYNSGLQAQ
NVFQMQDDLDGKPEVLYDPNLREGGRSGLSLYSVSEDAKYFAFGIHSGLT
EWVTIKILKTEDRSYLPDTLEWVKFSPAIWTHDNKGFFYCPYPPLKEGED
HMTRSAVNQEARYHFLGTDQSEDILLWRDLENPAHHLKCQITDDGKYFLL
YILDGCDDANKVYCLDLTKLPNGLESFSAPFMKLIDSFDASYTAIANDGS
VFTFQTNKDAPRKKLVRVDLNNPSVWTDLVPESKKDLLESAHAVNENQLI
LRYLSDVKHVLEIRDLESGALQHRLPIDIGSVDGITARRRDSVVFFKFTS
ILTPGIVYQCDLKNDPTQLKIFRESVVPDFDRSEFEVKQVFVPSKDGTKI
PIFIAARKGISLDGSHPCEMHGYGGFGINMMPTFSASRIVFLKHLGGVFC
LANIRGGGEYGEEWHKAGFRDKKQNVFDDFISAAEYLISSGYTKARRVAI
EGGANGGLLVAACINQRPDLFGCAEANCGVMDMLRFHKFTLGYLWTGDYG
CSDKEEEFKWLIKYSPIHNVRRPWEQPGNEETQYPATMILTADHDDRVVP
LHSFKLLATMQHVLCTSLEDSPQKNPIIARIQRKAAHYGRATMTQIAEVA
DRYGFMAKALEAPWID
3D structure
PDB5o3v Characterization of the Fast and Promiscuous Macrocyclase from Plant PCY1 Enables the Use of Simple Substrates.
ChainA
Resolution2.17 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.4.21.-
3.4.21.26: prolyl oligopeptidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A R81 F95 A102 N104 F178 C259 Y481 S493 A494 S495 A562 N563 W603 R655 H695 Y696 T700 V707 R78 F92 A99 N101 F175 C256 Y473 S485 A486 S487 A554 N555 W595 R647 H687 Y688 T692 V699
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
GO:0008236 serine-type peptidase activity
GO:0046872 metal ion binding
GO:0070012 oligopeptidase activity
Biological Process
GO:0006508 proteolysis
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5o3v, PDBe:5o3v, PDBj:5o3v
PDBsum5o3v
PubMed29377663
UniProtR4P353

[Back to BioLiP]