Structure of PDB 5nsf Chain A

Receptor sequence
>5nsfA (length=305) Species: 243232 (Methanocaldococcus jannaschii DSM 2661) [Search protein sequence]
DEFEMIKRNTSEIISEEELREVLKKDEKSAGIGFEPSGKIHLGHYLQIKK
MIDLQNAGFDIIIWLADLGAYLNQKGELDEIRKIGDYNKKVFEAMGLKAK
YVYGSEHNLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIY
PIMQVNAIHYNGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDG
EGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFLEY
PLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMRLKNAVAEELIKILEP
IRKRL
3D structure
PDB5nsf Site-Resolved Observation of Vibrational Energy Transfer Using a Genetically Encoded Ultrafast Heater.
ChainA
Resolution2.426 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.1.1.1: tyrosine--tRNA ligase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 96Z A G34 W65 A67 Y151 M154 Q155 Q173 G33 W64 A66 Y150 M153 Q154 Q172
BS02 CA A E135 E140 E134 E139
BS03 CA A K304 L306 K303 L305
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004812 aminoacyl-tRNA ligase activity
GO:0004831 tyrosine-tRNA ligase activity
GO:0005524 ATP binding
Biological Process
GO:0006412 translation
GO:0006418 tRNA aminoacylation for protein translation
GO:0006437 tyrosyl-tRNA aminoacylation
Cellular Component
GO:0005737 cytoplasm

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Cellular Component
External links
PDB RCSB:5nsf, PDBe:5nsf, PDBj:5nsf
PDBsum5nsf
PubMed30589180
UniProtQ57834|SYY_METJA Tyrosine--tRNA ligase (Gene Name=tyrS)

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