Structure of PDB 5ns4 Chain A

Receptor sequence
>5ns4A (length=138) Species: 274 (Thermus thermophilus) [Search protein sequence]
DVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLILEKAAQELA
LITGQKPAVTRAGMPIGLRVTLRRDRMWIFLEKLLNVALPGLNPNSFDGR
GNYNLGLREQGMDIAVVTTAETDEEARALLELLGFPFR
3D structure
PDB5ns4 Crystal Structures of Cyanine Fluorophores Stacked onto the End of Double-Stranded RNA.
ChainA
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A K36 V38 N40 I88 R91 S124 F125 D126 R128 N132 G134 R136 D156 A158 K33 V35 N37 I66 R69 S96 F97 D98 R100 N104 G106 R108 D113 A115
BS02 rna A Q66 K67 A69 R91 V92 T93 R95 R96 R98 Q55 K56 A58 R69 V70 T71 R73 R74 R76
BS03 MG A R128 N130 T161 A163 R100 N102 T118 A120
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:5ns4, PDBe:5ns4, PDBj:5ns4
PDBsum5ns4
PubMed29211987
UniProtP41201|RL5_THETH Large ribosomal subunit protein uL5 (Gene Name=rplE)

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