Structure of PDB 5ns3 Chain A

Receptor sequence
>5ns3A (length=135) Species: 274 (Thermus thermophilus) [Search protein sequence]
VALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLILEKAAQELAL
ITGQKPAVTRAPIGLRVTLRRDRMWIFLEKLLNVALPRIRGLNPNSFDGR
GNYNLGLGMDIAVVTTAETDEEARALLELLGFPFR
3D structure
PDB5ns3 Crystal Structures of Cyanine Fluorophores Stacked onto the End of Double-Stranded RNA.
ChainA
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A K36 N40 S124 F125 D126 R128 N132 G134 D156 A158 K32 N36 S96 F97 D98 R100 N104 G106 D110 A112
BS02 rna A Q66 K67 A69 R91 V92 T93 R95 R96 R98 Q54 K55 A57 R66 V67 T68 R70 R71 R73
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:5ns3, PDBe:5ns3, PDBj:5ns3
PDBsum5ns3
PubMed29211987
UniProtP41201|RL5_THETH Large ribosomal subunit protein uL5 (Gene Name=rplE)

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