Structure of PDB 5nka Chain A

Receptor sequence
>5nkaA (length=271) Species: 9606 (Homo sapiens) [Search protein sequence]
TTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTE
KQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFL
REKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCK
VSDFGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS
NHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILD
KLIRAPDSLKTLADFDVSIRL
3D structure
PDB5nka Chemoproteomics-Aided Medicinal Chemistry for the Discovery of EPHA2 Inhibitors.
ChainA
Resolution1.377 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) D739 A741 R743 N744 D757 P780
Catalytic site (residue number reindexed from 1) D135 A137 R139 N140 D153 P158
Enzyme Commision number 2.7.10.1: receptor protein-tyrosine kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 91H A K617 I619 A644 I645 K646 E663 I690 T692 Y694 M695 G698 L746 K13 I15 A40 I41 K42 E59 I86 T88 Y90 M91 G94 L142 MOAD: Kd=3.47uM
PDBbind-CN: -logKd/Ki=5.46,Kd=3.5uM
Gene Ontology
Molecular Function
GO:0004672 protein kinase activity
GO:0004713 protein tyrosine kinase activity
GO:0005524 ATP binding
Biological Process
GO:0006468 protein phosphorylation

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Molecular Function
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Biological Process
External links
PDB RCSB:5nka, PDBe:5nka, PDBj:5nka
PDBsum5nka
PubMed28544567
UniProtP29317|EPHA2_HUMAN Ephrin type-A receptor 2 (Gene Name=EPHA2)

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