Structure of PDB 5ngy Chain A

Receptor sequence
>5ngyA (length=1265) Species: 33964 (Leuconostoc citreum) [Search protein sequence]
VPETITGGRYSLKDGYYVYLDKQGKQVVGPKNIDNHLQYFDETTGKQVKG
DFRSVNGKRIYFNANLGYADDYTTDVAGKLVGYDSNGNQVKAGYVTNSQG
KTYYFNNQGEAIIGLKTDNNKTQYFGPDGAQVKGAFQQVNGKNIYFDAQT
GYARQNVGFLDGTAKGFDEQGNQIKSGIATDLSGNVYYFDASGKMLTGVQ
NIDGKKYYFDEQGHRRRNYAGVFNNEFIYFGLDGVGQSAIEYQFEKGLTS
QNSVATSHNAAKSYDTKSFTNVDGFLTANSWYRPTDILRNGTKWEPSTET
DFRPLLMTWWPDKEVQANYLNYMSALGLGDQKIYTGASSQLDLNNAALIV
QEAIEKKISLEKSTKWLDDSIKSFIKSKRKDIQGNLVDTNPGWTIDSETG
STNHLQNGAFIFTNSPLVPEANAAEGNRLINRTPSQQTGNHISYASQPYS
GDDWGYELLLGNDVDNSNPIVQAEQLNWIHYLMNFGTITAPQDPDAHLAN
FDSIRIDAVDNVDADLLQIAGDYFKAAYQVGENDKNANQHIHILQDWSPN
DVWYNQQVNGNSQLTMDATMQNQLLASLTRPITSRDSMKSFTKDALLVHR
TADNSYNQAVPNYSFIRAHDSEVQTIIAKIISDKHPDLYPTVDKALLAKD
SALYDEAFTEYNADMQKISSQKQYTHNNMPSAYAILLTNKDTVPRVYYGD
LFTDNGEYMANKTPYYDAITSLLTARTKFVSGGQSLSVDKNDVLTSVRYG
KGALSATDNGSSDTRNQGIGVIVSNNPNLDLNNDKVTLSMGISHAHQAYR
PLLLTNSQGIVAYATDSEVPQNLYKTTNDKGELTFDASEIKGYDTVQTSG
YLAVWVPVGASDEQDARTIASTEKNNGNSVYHSNAALDSQLIYEGFSNFQ
TVPSKNASADEYANVIIAKHAADFNKWGVTSFQMAPQYRSSTDGSFLDAV
DTVQNGYAFTDRYDLGFNAADGSKNPTKYGTDEDLRNAIKSLHAQKTYDG
SSIQVMADFVPDQLYNMPLEQAVSVIRTDKYGVNSENPDIQNIIYAANIK
SSGTDYQSIYGGKYLAELQKNPLFKSLFDRIQISTKKTIDPNTRITQWSA
KYFNGSNIQGKGINYVLKDWASNKYFNVSSNDDMYSRLPKQLMNQESNTG
FIVDDIGVKYYSISGYQAKNTFVEDGNGEWYYFDNDGYMVKSTEESGPLR
TVNASSKKYYILPNGVEIRNSFGQDIQGNTYYFDARGEMVTSQYISDDTQ
NIYYFNNDGTMAKKG
3D structure
PDB5ngy Investigations on the Determinants Responsible for Low Molar Mass Dextran Formation by DSR-M Dextransucrase
ChainA
Resolution3.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.4.1.5: dextransucrase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLC A K219 N235 L236 K49 N65 L66
BS02 GLC A Y180 Q217 K219 L236 Y10 Q47 K49 L66
BS03 CA A E627 D633 N681 V682 D1182 E457 D463 N511 V512 D1012
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity
GO:0046527 glucosyltransferase activity
GO:0046872 metal ion binding
GO:0047849 dextransucrase activity
Biological Process
GO:0009250 glucan biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5ngy, PDBe:5ngy, PDBj:5ngy
PDBsum5ngy
PubMed
UniProtA0A2H4A2Q1

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