Structure of PDB 5mte Chain A

Receptor sequence
>5mteA (length=137) Species: 238892 (Vibrio phage VP16T) [Search protein sequence]
MKILKDDAPELHAIAAEVPHGEDVKDLVLDMTAAMTAAGGIGLAGNQVGV
LKRIIVLRCPTFKGCVINPIITRHTDGHVYSPEGCLSYPGKTVAKKRRNK
VVVEGYDMDWQPITIAAKGLTAFCLQHEIDHLNGVTI
3D structure
PDB5mte Peptide deformylases from Vibrio parahaemolyticus phage and bacteria display similar deformylase activity and inhibitor binding clefts.
ChainA
Resolution1.4 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) G42 Q47 C85 L86 H127 E128 H131
Catalytic site (residue number reindexed from 1) G42 Q47 C85 L86 H127 E128 H131
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BB2 A G40 I41 G42 Q47 P82 E83 G84 C85 L86 H127 E128 H131 G40 I41 G42 Q47 P82 E83 G84 C85 L86 H127 E128 H131 PDBbind-CN: -logKd/Ki=6.78,Ki=167nM
BS02 ZN A C85 H127 H131 C85 H127 H131
Gene Ontology
Molecular Function
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0018206 peptidyl-methionine modification

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5mte, PDBe:5mte, PDBj:5mte
PDBsum5mte
PubMed29101077
UniProtQ6VT21

[Back to BioLiP]