Structure of PDB 5mbk Chain A

Receptor sequence

>5mbkA (length=339) Species: 422289 (Beggiatoa sp. PS)

MKRLVFISKISGHSLEEIQRIGKVSIKNNQRDNITGVLLYLQGLFFQILE
NEKVDKLYKKILVDDRHTNILCLKTEYDITDRMFPNWAMKTINLNENSEL
MIQPIKSLLQTITQSHRVLEKYMPARVIYLINQGINPLTVEPQLVEKIIF
FSDILAFSTLTEKLPVNEVVILVNRYFSICTRIISAYGGEVTKFIGDCVM
ASFTKEQGDAAIRTSLDIISELKQLRHHVEATNPLHLLYTGIGLSYGHVI
EGNMGSSLKMDHTLLGDAVNVAARLEALTRQLPYALAFTAGVKKCCQAQW
TFINLGAHQVEAIEVYTVNEAQKYYDTLQITQLIRQTLE

3D structure

• PDB: 5mbk Photoactivation Mechanism of a Bacterial Light-Regulated Adenylyl Cyclase.
• Chain: A
• Resolution: 2.4 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	ATP	A	D157 I158 L159 A160 F161 S162 I199 G200 D201 R284	D153 I154 L155 A156 F157 S158 I195 G196 D197 R280
BS02	MG	A	D157 I158 D201	D153 I154 D197
BS03	MG	A	D157 D201	D153 D197

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed Dec 18 23:17:54 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5mbk', asym_id = 'A', title = 'Photoactivation Mechanism of a Bacterial Light-Regulated Adenylyl Cyclase.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5mbk', asym_id='A', title='Photoactivation Mechanism of a Bacterial Light-Regulated Adenylyl Cyclase.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0009190,0009882,0035556,0071949', uniprot = '', pdbid = '5mbk', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009190,0009882,0035556,0071949', uniprot='', pdbid='5mbk', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>