Structure of PDB 5m5d Chain A

Receptor sequence
>5m5dA (length=347) Species: 657309 (Bacteroides xylanisolvens XB1A) [Search protein sequence]
LGTELDYDTFCFYYDWYGSEAIDGQYRHWAHAIAPDPNGGSGQNPGTIPG
TQESIASNFYPQLGRYSSSDPNILTKHMDMFVMARTGVLALTWWNEQDET
EAKRIGLILDAADKKKIKVCFHLEPYPSRNVQNLRENIVKLITRYGNHPA
FYRKDGKPLFFIYDSYLIEPSEWEKLLSPGGSITIRNTAYDALMIGLWTS
SPTVQRPFILNAHFDGFYTYFAATGFTYGSTPTNWVSMQKWAKENGKIFI
PSVGPGYIDTRIRPWNGSVIRTRTDGQYYDAMYRKAIEAGVSAISITSFN
EWHEGSQIEPAVPYTSSEFTYLDYENREPDYYLTRTAYWVGKFRESK
3D structure
PDB5m5d Contribution of Shape and Charge to the Inhibition of a Family GH99 endo-alpha-1,2-Mannanase.
ChainA
Resolution1.07 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 DGO A Y46 W126 H154 E156 Y195 Y252 E333 E336 Y14 W94 H122 E124 Y163 Y220 E301 E304 PDBbind-CN: -logKd/Ki=3.95,Kd=111uM
BS02 MAN A H63 R295 E333 H335 E336 H31 R263 E301 H303 E304 PDBbind-CN: -logKd/Ki=3.95,Kd=111uM
Gene Ontology
Molecular Function
GO:0004559 alpha-mannosidase activity
GO:0016787 hydrolase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
Cellular Component
GO:0016020 membrane

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Molecular Function
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Cellular Component
External links
PDB RCSB:5m5d, PDBe:5m5d, PDBj:5m5d
PDBsum5m5d
PubMed27992199
UniProtD6D1V7

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