Structure of PDB 5m47 Chain A

Receptor sequence
>5m47A (length=280) Species: 196627 (Corynebacterium glutamicum ATCC 13032) [Search protein sequence]
MNLTIPFAKGHATENDFIIIPDEDARLDLTPEMVVTLCDRRAGIGADGIL
RVVKAADVEGSTVDPSLWFMDYRNADGSLAEMCGNGVRLFAHWLYSRGLV
DNTSFDIGTRAGVRHVDILQADQHSAQVRVDMGIPDVTGLSTCDINGQVF
AGLGVDMGNPHLACVVPGLSASALADMELRAPTFDQEFFPHGVNVEIVTE
LEDDAVSMRVWERGVGETRSCGTGTVAAACAALADAGLGEGTVKVCVPGG
EVEVQIFDDGSTLTGPSAIIALGEVQIHHH
3D structure
PDB5m47 Structural basis for redox sensitivity in Corynebacterium glutamicum diaminopimelate epimerase: an enzyme involved in l-lysine biosynthesis.
ChainA
Resolution2.59 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) C83 H161 E212 C221 G224
Catalytic site (residue number reindexed from 1) C83 H161 E212 C221 G224
Enzyme Commision number 5.1.1.7: diaminopimelate epimerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 API A N15 N74 C83 G84 N85 N159 N194 E212 R213 C221 G222 T223 N15 N74 C83 G84 N85 N159 N194 E212 R213 C221 G222 T223
Gene Ontology
Molecular Function
GO:0008837 diaminopimelate epimerase activity
GO:0016853 isomerase activity
Biological Process
GO:0009085 lysine biosynthetic process
GO:0009089 lysine biosynthetic process via diaminopimelate
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Biological Process
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Cellular Component
External links
PDB RCSB:5m47, PDBe:5m47, PDBj:5m47
PDBsum5m47
PubMed28176858
UniProtQ8NP73|DAPF_CORGL Diaminopimelate epimerase (Gene Name=dapF)

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