Structure of PDB 5m11 Chain A

Receptor sequence
>5m11A (length=748) Species: 837 (Porphyromonas gingivalis) [Search protein sequence]
GIWNTLLAIHKTEKAVETPKKVFAVANGVLYSVGKEAPHEAKIFDRISGL
SDTSVSSIAYSEQLKSLVIYYASGNIDILDEAGRVTNVPALKDNIDLIDK
TLNRLLIVGNRAYLAGGFGLSVLDVAEARIPATYAKGTKVTDVAKLDNDR
LLMLKEGQLFIGKETDNLQDPAAWTALSLNLPMGSVTGLGIVGEDICFLL
ADGRVYVAANQSFEPELLLSSSADSRLYVTDRGLFICAENRIYFIEKGRK
TTQFPIADVLGVGAMNESNTAYIALGEEGLASLLLAEGSTAEAMPVAFDG
PGDNDFYEMRFSHGRLYAASGLWGTNLMGHAGMVKLYDGNRWTNFDKKTV
QEQLGGGFSFNDAIDIAVSNGDPDHFFVGTWGNGLFEFKDGKAIARYSGN
ETAIAECNPGDARVKAIAFDNKGNLWGTLGAVGKNIFMYDPQSSTWHSFS
YPDVANLASFGNMIILPNGDKWVNILHRSGGSTRKGVLIFNDRGTPETTS
DDSHLYVEQFVNRLGAAIGHKTIYAMAVDHNGSVWMGSDIGIFGVYNAAG
VLSSTSTPIAVRPVGGEEPNLYYVLDKVTVTDIVVDKLNHKWVATQGTGL
YLLSEDCSKILAQFTVENSPLLSNNILSLALNDDNGLLYIGTADGLMTFQ
TGTGSGSASELDGVYVYPNPLRPEYPDGVTIAGLQAGCSVKITDTTGRLL
YQTESVTTEVKWNARGADGNRVASGVYAVAVYDPVSKKSKLIRFAVIR
3D structure
PDB5m11 Structural and functional probing of PorZ, an essential bacterial surface component of the type-IX secretion system of human oral-microbiomic Porphyromonas gingivalis.
ChainA
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A D520 T523 T526 D529 D530 D492 T495 T498 D501 D502
BS02 ZN A D400 D402 K417 D372 D374 K389
BS03 ZN A D481 H532 D453 H504
BS04 ZN A D333 H358 D305 H330
BS05 ZN A D152 E155 D124 E127
BS06 CA A E688 D761 E660 D733
BS07 CA A D468 Q470 D440 Q442
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5m11, PDBe:5m11, PDBj:5m11
PDBsum5m11
PubMed27883039
UniProtQ9S3Q8

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