Structure of PDB 5ly8 Chain A

Receptor sequence

>5ly8A (length=230) Species: 1414736 (Lactobacillus phage J-1) [Search protein sequence]

VKQKSERVYHLDFNQTPTGVTLNNGVTAFPYYEHGNDANVQSGPFGYANG
IAYPSTERTASNYWNGPSMSGTIPKNSNGSNTANFQFVNRVNVGTNAAEV
GRFEFNLTYQGKIVASLALFDDSASNDQWVFSGTVYDGSQAQMLFFDLLP
RNYYRDGNYNAVITKMGDQLTFRLDRIDLGDGGIETRTVSGFSSVPIDGW
TAWFPGFSDQRGWSINWQDSYFEWINVDYW

3D structure

PDB

5ly8 Evolved distal tail carbohydrate binding modules of Lactobacillus phage J-1: a novel type of anti-receptor widespread among lactic acid bacteria phages.

Chain

Resolution

1.28 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	MG	A	A106 E108 D130 S132 N135	A97 E99 D121 S123 N126
BS02	MG	A	D21 G59 Q227	D12 G50 Q218

External links

PDB	RCSB:5ly8, PDBe:5ly8, PDBj:5ly8
PDBsum	5ly8
PubMed	28196397
UniProt	U5U3S0

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