Structure of PDB 5lom Chain A

Receptor sequence
>5lomA (length=241) Species: 176299 (Agrobacterium fabrum str. C58) [Search protein sequence]
DNPLGLIDPTTISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFK
KEQVVFTGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGF
LSVLTSEAGITDAAGLKGKRLGVVQGTLQEIYAEKNFAGTDLVKFPDNNS
AVSALNNGTVDAHFLDFEAAKDYSARYPALKIAVNIPSFDAPAGFVIRKG
NDALRNALDKGLKEAMQDGTWKKLHEKWFPGTPMPAAYLPK
3D structure
PDB5lom Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.
ChainA
Resolution1.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SNW A F96 A113 A114 G116 R121 A133 G134 T162 L163 Q164 D201 S223 A226 F61 A78 A79 G81 R86 A98 G99 T127 L128 Q129 D166 S188 A191 PDBbind-CN: -logKd/Ki=7.13,Kd=74.1nM
Gene Ontology
Molecular Function
GO:0015276 ligand-gated monoatomic ion channel activity
Biological Process
GO:0034220 monoatomic ion transmembrane transport
Cellular Component
GO:0016020 membrane
GO:0042597 periplasmic space

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Molecular Function
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Cellular Component
External links
PDB RCSB:5lom, PDBe:5lom, PDBj:5lom
PDBsum5lom
PubMed27609514
UniProtQ7D447

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