Structure of PDB 5lgo Chain A

Receptor sequence

>5lgoA (length=223) Species: 9913 (Bos taurus)

IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRL
GEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRV
ASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKS
AYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQK
NKPGVYTKVCNYVSWIKQTIASN

3D structure

• PDB: 5lgo Trypsin inhibitors for the treatment of pancreatitis.
• Chain: A
• Resolution: 1.12 Å

Enzymatic activity

• Catalytic site (original residue number in PDB): H57 D102 Q192 G193 D194 S195 G196
• Catalytic site (residue number reindexed from 1): H40 D84 Q174 G175 D176 S177 G178
• Enzyme Commision number: 3.4.21.4: trypsin.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CA	A	E70 D71 N72 V75 E77 E80	E52 D53 N54 V57 E59 E62
BS02	6VZ	A	H57 N97 T98 L99 D189 S190 C191 Q192 G193 S195 V213 W215 G216 G219	H40 N79 T80 L81 D171 S172 C173 Q174 G175 S177 V191 W193 G194 G196	PDBbind-CN: -logKd/Ki=8.22,IC50=0.006uM

Gene Ontology

Molecular Function

• GO:0004175 endopeptidase activity
• GO:0004252 serine-type endopeptidase activity
• GO:0005515 protein binding
• GO:0008236 serine-type peptidase activity
• GO:0046872 metal ion binding
• GO:0097655 serpin family protein binding

Biological Process

• GO:0006508 proteolysis
• GO:0007586 digestion

Cellular Component

• GO:0005576 extracellular region
• GO:0005615 extracellular space
• GO:0097180 serine protease inhibitor complex

External links

• PDB: RCSB:5lgo, PDBe:5lgo, PDBj:5lgo
• PDBsum: 5lgo
• PubMed: 27476144
• UniProt: P00760|TRY1_BOVIN Serine protease 1 (Gene Name=PRSS1)