Structure of PDB 5l9l Chain A

Receptor sequence

>5l9lA (length=323) Species: 1183423 (Agrobacterium tumefaciens str. B6) [Search protein sequence]

MDVVIASSGGGWQEAQDKALWAPAAKALNITYTQDTFQNWAEARAQVESG
SVTWDIIQIGIADEPQAKAAGVLEKLDPDIVNKADFPPGSVTDSFVANSN
YSTLIAWNKKTYGDNGPKSMADFFDVKKFPGKRALWNQPIGMIEAAALAL
GTPRDKVYEFLSTEEGRKAAIAKLTELAPSVSVWWESGAQAAQLIKDGEV
DMIITWGGRVQGAINDGANFAYTFNDAQLGTDGYAIVKGAPHRDAAMRFL
KEMSKAEYQKDLPNSFATAPANMKAYDLAKYTPEKMATMASAPENVAVQY
SVDPNFWAKHAKWASEAYDNVRL

3D structure

PDB

5l9l Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.

Chain

Resolution

1.8 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	GOP	A	S37 W41 Q67 Q87 Y130 W235 R238 D261 T297	S8 W12 Q38 Q58 Y101 W206 R209 D232 T268	MOAD: Kd=79.4nM PDBbind-CN: -logKd/Ki=7.10,Kd=79.4nM
BS02	CA	A	G40 A218 R238	G11 A189 R209
BS03	CA	A	L258 G259 T260	L229 G230 T231
BS04	CA	A	A250 Y251	A221 Y222
BS05	CA	A	A247 N248	A218 N219

External links

PDB	RCSB:5l9l, PDBe:5l9l, PDBj:5l9l
PDBsum	5l9l
PubMed	27609514

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