Structure of PDB 5l9i Chain A

Receptor sequence

>5l9iA (length=326) Species: 1183423 (Agrobacterium tumefaciens str. B6) [Search protein sequence]

HMDVVIASSGGGWQEAQDKALWAPAAKALNITYTQDTFQNWAEARAQVES
GSVTWDIIQIGIADEPQAKAAGVLEKLDPDIVNKADFPPGSVTDSFVANS
NYSTLIAWNKKTYGDNGPKSMADFFDVKKFPGKRALWNQPIGMIEAAALA
LGTPRDKVYEFLSTEEGRKAAIAKLTELAPSVSVWWESGAQAAQLIKDGE
VDMIITWGGRVQGAINDGANFAYTFNDAQLGTDGYAIVKGAPHRDAAMRF
LKEMSKAEYQKDLPNSFATAPANMKAYDLAKYTPEKMATMASAPENVAVQ
YSVDPNFWAKHAKWASEAYDNVRLSR

3D structure

PDB

5l9i Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.

Chain

Resolution

1.9 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	SNW	A	S37 W41 Q67 Q87 Y130 W235 R238 D261 T297	S9 W13 Q39 Q59 Y102 W207 R210 D233 T269	MOAD: Kd=99nM PDBbind-CN: -logKd/Ki=7.00,Kd=99nM
BS02	CA	A	W235 G236 G237 R238 F295	W207 G208 G209 R210 F267
BS03	CA	A	G39 G40 A218 R238	G11 G12 A190 R210

External links

PDB	RCSB:5l9i, PDBe:5l9i, PDBj:5l9i
PDBsum	5l9i
PubMed	27609514

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