Structure of PDB 5kod Chain A

Receptor sequence
>5kodA (length=573) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
DQKNKQKLQLIEELTSNADQVQRQVLEEILTRNADVEYLRRHDLNGRTDR
ETFKNIMPVITYEDIEPEINRIANGDKSPILSSKPISEFLTSSGTSGGER
KLMPTIEEELDRRSLLYSLLMPVMSQFVPGLENGKGMYFLFIKSESKTPG
GLPARPVLTSYYKSSHFKERPYDPYTNYTSPNETILCSDSYQSMYSQMLC
GLCQHQEVLRVGAVFASGFIRAIKFLEKHWIELVRDIRTGTLSSLITDPS
VREAVAKILKPSPKLADFVEFECKKSSWQGIITRLWPNTKYVDVIVTGTM
SQYIPTLDYYSNGLPLVCTMYASSECYFGVNLRPLCKPSEVSYTLIPSMA
YFEFLPVHRQQELVDLVDVKLGQEYELVVTTYAGLCRYRVGDLLRVTGFK
NKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYT
SYADTSSIPGHYVLFWELCLDGNTPIPPSVFEDCCLAVEESFNTVYRQGR
VSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIEL
LNSRVVDSYFSPKCPKWVPGHKQ
3D structure
PDB5kod Arabidopsis thaliana GH3.5 acyl acid amido synthetase mediates metabolic crosstalk in auxin and salicylic acid homeostasis.
ChainA
Resolution2.202 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 6.3.2.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP A S110 I312 T314 A339 S340 S341 Y360 D427 F443 R446 S93 I295 T297 A322 S323 S324 Y343 D392 F408 R411
BS02 IAC A K160 P173 L175 F232 K143 P156 L158 F215
Gene Ontology
Molecular Function
GO:0010279 indole-3-acetic acid amido synthetase activity
GO:0016874 ligase activity
Biological Process
GO:0009733 response to auxin
GO:0010120 camalexin biosynthetic process
GO:1901183 positive regulation of camalexin biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5kod, PDBe:5kod, PDBj:5kod
PDBsum5kod
PubMed27849615
UniProtO81829|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 (Gene Name=GH3.5)

[Back to BioLiP]