Structure of PDB 5kob Chain A

Receptor sequence
>5kobA (length=171) Species: 266265 (Paraburkholderia xenovorans LB400) [Search protein sequence]
HHMIREILKMGDPRLLRIADPVDHFDTPELHELVKDMFETMHDANGAGLA
APQIGVNLQVVIFGFGHNERYPDAPPVPETVLINPTITPVSQDMEEGWEG
CLSVPGLRGAVSRFSMIKYHGFDQYGKPIDRVAEGFHARVVQHECDHLIG
KLYPMRINDFAKFGFTEVLFP
3D structure
PDB5kob Crystal structure of a peptide deformylase from Burkholderia xenovorans
ChainA
Resolution1.6 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G46 Q51 C99 L100 H141 E142 H145
Catalytic site (residue number reindexed from 1) G48 Q53 C101 L102 H143 E144 H147
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FE2 A Q51 C99 H141 H145 Q53 C101 H143 H147
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

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Molecular Function
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Biological Process
External links
PDB RCSB:5kob, PDBe:5kob, PDBj:5kob
PDBsum5kob
PubMed
UniProtQ13XB1

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