Structure of PDB 5kd4 Chain A

Receptor sequence
>5kd4A (length=273) Species: 10090 (Mus musculus) [Search protein sequence]
SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARW
IEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGC
DVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAG
AAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTL
RCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPL
GKEQKYTCHVEHEGLPEPLTLRW
3D structure
PDB5kd4 Effects of Cross-Presentation, Antigen Processing, and Peptide Binding in HIV Evasion of T Cell Immunity.
ChainA
Resolution3.05 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A Y7 Y59 R62 E63 R66 G69 N70 S73 F74 D77 T80 Y84 W97 W114 F116 T143 K146 W147 R155 Y159 W167 Y171 Y6 Y58 R61 E62 R65 G68 N69 S72 F73 D76 T79 Y83 W96 W113 F115 T142 K145 W146 R154 Y158 W166 Y170
External links
PDB RCSB:5kd4, PDBe:5kd4, PDBj:5kd4
PDBsum5kd4
PubMed29374075
UniProtP01900|HA12_MOUSE H-2 class I histocompatibility antigen, D-D alpha chain (Gene Name=H2-D1)

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