Structure of PDB 5k2d Chain A

Receptor sequence
>5k2dA (length=395) Species: 562,9606 [Search protein sequence]
DGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVS
LAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLA
IAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCG
QPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVY
LRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALD
AQKAPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAY
IQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCS
HAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL
3D structure
PDB5k2d Native phasing of x-ray free-electron laser data for a G protein-coupled receptor.
ChainA
Resolution1.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZMA A L85 F168 E169 M177 L249 H250 N253 M270 L88 F171 E172 M180 L336 H337 N340 M357
BS02 CLR A F255 S263 F342 S350
BS03 CLR A A72 G76 I80 A75 G79 I83
Gene Ontology
Molecular Function
GO:0001609 G protein-coupled adenosine receptor activity
GO:0004930 G protein-coupled receptor activity
GO:0005506 iron ion binding
GO:0009055 electron transfer activity
GO:0020037 heme binding
GO:0046872 metal ion binding
Biological Process
GO:0001973 G protein-coupled adenosine receptor signaling pathway
GO:0007186 G protein-coupled receptor signaling pathway
GO:0022900 electron transport chain
Cellular Component
GO:0016020 membrane
GO:0042597 periplasmic space

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5k2d, PDBe:5k2d, PDBj:5k2d
PDBsum5k2d
PubMed27679816
UniProtP0ABE7|C562_ECOLX Soluble cytochrome b562 (Gene Name=cybC);
P29274|AA2AR_HUMAN Adenosine receptor A2a (Gene Name=ADORA2A)

[Back to BioLiP]