Structure of PDB 5jwd Chain A

Receptor sequence
>5jwdA (length=258) Species: 10090 (Mus musculus) [Search protein sequence]
GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAP
WMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSG
CDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQS
GAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPTLRCWAL
GFYPADITLTWMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGL
PEPLTLRW
3D structure
PDB5jwd Crystal structures of H-2Db in complex with the LCMV-derived peptides GP92 and GP392 explain pleiotropic effects of glycosylation on antigen presentation and immunogenicity.
ChainA
Resolution2.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A Y7 E9 Y59 R62 E63 K66 Q70 W73 V76 S77 N80 Y84 L95 Q97 T143 K146 W147 S150 H155 Y156 Y159 E163 W167 Y171 Y7 E9 Y59 R62 E63 K66 Q70 W73 V76 S77 N80 Y84 L95 Q97 T143 K146 W147 S150 H155 Y156 Y159 E163 W167 Y171
External links
PDB RCSB:5jwd, PDBe:5jwd, PDBj:5jwd
PDBsum5jwd
PubMed29253009
UniProtP01899|HA11_MOUSE H-2 class I histocompatibility antigen, D-B alpha chain (Gene Name=H2-D1)

[Back to BioLiP]