Structure of PDB 5jvn Chain A

Receptor sequence
>5jvnA (length=873) Species: 4226 (Flaveria pringlei) [Search protein sequence]
AKKRVFTFGKGRSEGNKDMKSLLGGKGANLAEMASIGLSVPPGLTISTEA
CEEYQQNGKKLPPGLWDEILEGLRYVQKEMSASLGDPSKPLLLSVRSGAA
ISMPGMMDTVLNLGLNDEVVAGLAGKSGARFAYDSYRRFLDMFGNVVMGI
PHSLFDEKLEEMKAEKGVHLDTDLTAADLKDLVEQYKNVYVEAKGEKFPT
DPKKQLELAVNAVFDSWDSPRANKYRSINQITGLKGTAVNIQCMVFGNMG
NTSGTGVLFTRNPSTGEKKLYGEFLVNAQGEDVVAGIRTPEDLATMETCM
PEAYRELVENCKILERHYKDMMDIEFTVQENRLWMLQCRTGKRTGKGAVR
IAVDMVNEGLIDTRTAIKRVETQHLDQLLHPQFENPSAYKSHVVATGLPA
SPGAAVGQVVFSAEDAETWHAQGKSAILVRTETSPEDVGGMHAAAGILTA
RGGMTSHAAVVARGWGKCCVSGCADIRVNDDMKVLTIRVIKEGDWLSLNG
STGEVILGKQLLAPPAMSNDLETFMSWADQVRRLKVMANADTPNDALTAR
NNGAQGIGLCRTEHMFFASDERIKAVRKMIMAVTPEQRKAALDLLLPYQR
SDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEHIVNELAVDTGMSEDE
IYSKIEKLSEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMNNQGVT
VIPEIMVPLVGTPQELRHQIGVIRGVAANVFAEMGLTMDYKVGTMIEIPR
AALIAEEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLQIYLSQGILQHD
PFEVLDQKGVGQLIKMATEKGRAANPNLKVGICGEHGGEPSSVAFFDGVG
LDYVSCSPFRVPIARLAAAQVVV
3D structure
PDB5jvn Structural intermediates and directionality of the swiveling motion of Pyruvate Phosphate Dikinase.
ChainA
Resolution2.9 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) K25 R95 G104 M106 R338 H456 E748 S767 D772 C834 Y854
Catalytic site (residue number reindexed from 1) K26 R96 G105 M107 R339 H457 E747 S766 D771 C833 Y853
Enzyme Commision number 2.7.9.1: pyruvate, phosphate dikinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 6NQ A K25 R95 L110 C242 M243 V244 Q336 K26 R96 L111 C243 M244 V245 Q337
BS02 PEP A R562 R619 E748 G769 N771 D772 R561 R618 E747 G768 N770 D771
BS03 MG A E748 D772 E747 D771
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016772 transferase activity, transferring phosphorus-containing groups
GO:0046872 metal ion binding
GO:0050242 pyruvate, phosphate dikinase activity
Biological Process
GO:0006090 pyruvate metabolic process
GO:0015979 photosynthesis
GO:0016310 phosphorylation
Cellular Component
GO:0009507 chloroplast

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5jvn, PDBe:5jvn, PDBj:5jvn
PDBsum5jvn
PubMed28358005
UniProtQ42736|PPDK_FLAPR Pyruvate, phosphate dikinase, chloroplastic (Gene Name=PPDK)

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