Structure of PDB 5jvj Chain A

Receptor sequence
>5jvjA (length=865) Species: 4227 (Flaveria trinervia) [Search protein sequence]
KKRVFTFGKGRSEGNRDMKSLLGGKGANLAEMSSIGLSVPPGLTISTEAC
EEYQQNGKSLPPGLWDEISEGLDYVQKEMSASLGDPSKPLLLSVRSGAAI
SMDTVLNLGLNDEVVAGLAGKSGARFAYDSYRRFLDMFGNVVMGIPHSLF
DEKLEQMKAEDTDLTAADLKDLVEKYKNVYVEAKGEKFPTDPKKQLELAV
NAVFDSWDSPRANKYRSINQITGLKGTAVNIQSMVFGNMGNTSGTGVLFT
RNPSTGEKKLYGEFLINAQGEDVVAGIRTPEDLGTMETCMPEAYKELVEN
CEILERHYKDMMDIEFTVQENRLWMLQCRTGKRTGKGAVRIAVDMVNEGL
IDTRTAIKRVETQHLDQLLHPQFEDPSAYKSHVVATGLPASPGAAVGQVC
FSAEDAETWHAQGKSAILVRTETSPEDVGGMHAAAGILTARGGMTSHAAV
VARGWGKCCVSGCADIRVNDDMKIFTIGDRVIKEGDWLSLNGTTGEVILG
KQLLAPPAMSNDLEIFMSWADQARRLKVMANADTPNDALTARNNGAQGIG
LCRTEHMFFASDERIKAVRKMIMAVTPEQRKVALDLLLPYQRSDFEGIFR
AMDGLPVTIRLLDPPLHEFLPEGDLEHIVNELAVDTGMSADEIYSKIENL
SEVNPMLGFRGCRLGISYPELTEMQVRAIFQAAVSMTNQGVTVIPEIMVP
LVGTPQELRHQISVIRGVAANVFAEMGVTLEYKVGTMIEIPRAALIAEEI
GKEADFFSFGTNDLTQMTFGYSRDDVGKFLQIYLAQGILQHDPFEVIDQK
GVGQLIKMATEKGRAANPSLKVGICGEHGGEPSSVAFFDGVGLDYVSCSP
FRVPIARLAAAQVIV
3D structure
PDB5jvj Structural intermediates and directionality of the swiveling motion of Pyruvate Phosphate Dikinase.
ChainA
Resolution2.898 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) K25 R95 R338 H456 E748 S767 D772 C834 Y854
Catalytic site (residue number reindexed from 1) K25 R95 R329 H447 E739 S758 D763 C825 Y845
Enzyme Commision number 2.7.9.1: pyruvate, phosphate dikinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PEP A R562 R619 M746 E748 G769 N771 D772 R782 C834 R553 R610 M737 E739 G760 N762 D763 R773 C825
BS02 MG A E748 D772 E739 D763
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016772 transferase activity, transferring phosphorus-containing groups
GO:0046872 metal ion binding
GO:0050242 pyruvate, phosphate dikinase activity
Biological Process
GO:0006090 pyruvate metabolic process
GO:0015979 photosynthesis
GO:0016310 phosphorylation
Cellular Component
GO:0005737 cytoplasm
GO:0009507 chloroplast

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5jvj, PDBe:5jvj, PDBj:5jvj
PDBsum5jvj
PubMed28358005
UniProtP22221|PPDK_FLATR Pyruvate, phosphate dikinase, chloroplastic (Gene Name=PPDK)

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