Structure of PDB 5jrk Chain A

Receptor sequence
>5jrkA (length=695) Species: 317655 (Sphingopyxis alaskensis RB2256) [Search protein sequence]
KGRPWTLEDILTVPEVNEIALSDNGRLAIYAAEIADLDAGKPRSHIRIVD
VETGRTKELLTVDTIKSLRSVPGTQDWSALVDLGEGQQLYRIDTEGKLLP
LIVNPNPVPVGKADMSFPLGGGIRPSHIGILDYDWSPDGKWLWYSQLRAK
SDGPRVRFDEEVTALLGRRRSTIDVEVDFFLRNPEGDTTRIMARPSTDRV
ATRGGGRVLWRGNEVQFRIETSDGGGAFEFVAWNRVNRTVRTLAKQRDLL
SMSILVGPRGGQLSTSGLGSDRELIETSAEGRPHSYGRVAFDIGDSRSAG
WKRSRDGKRVVIGTRGLGDARYGLALIDKTGVRELRADASLTRCGFDGML
RSAICVEEGMSRPPRLVRVDLGTDKITDLGPISPRHEEIEPLQTIARTFV
SRDGYWSSGYVLLPRGHRAADRHPAVVVTHGTDADDRFAEPANQWNYPVQ
LLAERGYVVLLLNDPSPGQSKDLMDAMHAWLRGKGPPDPETVQQKLWLTG
VHSFEDAVTELAAEGLIDPARVGIAGYSRGSQMVNVTVTNSKMFRAASSG
DGGFLEPAGYATGRSSYDAVYGGAPLSDNIERWRRFAPSLNADKVCAAVL
QQVASASPSQIELFEALRAAGVATQISYYPGATAASDETHVFYLTTNRLR
AMRENIAWFDYWLLDKRDADAPFPDHVVKWDRLKKNLPDRCAAAP
3D structure
PDB5jrk Structure and Mechanism of the Sphingopyxin I Lasso Peptide Isopeptidase.
ChainA
Resolution3.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC A A49 L50 S99 K333 G376 F377 A20 L21 S70 K302 G345 F346
Gene Ontology
Molecular Function
GO:0008236 serine-type peptidase activity
Biological Process
GO:0006508 proteolysis

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5jrk, PDBe:5jrk, PDBj:5jrk
PDBsum5jrk
PubMed27611791
UniProtQ1GQ33

[Back to BioLiP]