Structure of PDB 5jmv Chain A

Receptor sequence
>5jmvA (length=323) Species: 243232 (Methanocaldococcus jannaschii DSM 2661) [Search protein sequence]
MDPMICLGLEGTAEKTGVGIVTSDGEVLFNKTIMYKPNPREAADHHAETF
PKLIKEAFEVVDKNEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPII
GVNHCIAHIEIGKLTTEAEDPLTLYVSGGNTQVIAYVSKKYRVFGETLDI
AVGNCLDQFARYVNLPHPGGPYIEELARKGKKLVDLPYTVKGMDIAFSGL
LTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTNKGEVMLVGG
VAANNRLREMLKAMCEGQNVDFYVPPKEFCGDNGAMIAWLGLLMHKNGRW
MSLDETKIIPNYRTDMVEVNWIK
3D structure
PDB5jmv Structural and functional characterization of KEOPS dimerization by Pcc1 and its role in t6A biosynthesis.
ChainA
Resolution3.38647 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.3.1.234: N(6)-L-threonylcarbamoyladenine synthase.
2.7.11.1: non-specific serine/threonine protein kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP A K12 S129 G130 G155 L158 D159 G172 P173 G252 V253 A255 N256 K15 S127 G128 G153 L156 D157 G170 P171 G250 V251 A253 N254
BS02 MG A H106 H110 Y127 D284 H104 H108 Y125 D282
Gene Ontology
Biological Process
GO:0002949 tRNA threonylcarbamoyladenosine modification
Cellular Component
GO:0000408 EKC/KEOPS complex

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5jmv, PDBe:5jmv, PDBj:5jmv
PDBsum5jmv
PubMed27302132
UniProtQ58530|KAE1B_METJA Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein (Gene Name=MJ1130)

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