Structure of PDB 5j6h Chain A

Receptor sequence
>5j6hA (length=275) Species: 10090 (Mus musculus) [Search protein sequence]
GSHSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAP
WMEQEGPEYWERETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYG
CKVGSDGRFLRGYLQYAYDGRDYIALNEDLKTWTAADVAAIITRRKWEQA
GAAEYYRAYLEAECVEWLLRYLELGKETLLRTDPPKTHVTHHPGEGDVTL
RCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPL
GKEQNYTCHVYHEGLPEPLTLRWEP
3D structure
PDB5j6h Recognition of the Major Histocompatibility Complex (MHC) Class Ib Molecule H2-Q10 by the Natural Killer Cell Receptor Ly49C.
ChainA
Resolution2.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A Y7 E63 R66 N70 S73 F74 S77 Y84 W97 Y99 Y116 T143 W147 Y155 Y156 Y159 W167 Y171 Y7 E63 R66 N70 S73 F74 S77 Y84 W97 Y99 Y116 T143 W147 Y155 Y156 Y159 W167 Y171
BS02 NCA A P47 R48 P47 R48
Gene Ontology
Biological Process
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I
Cellular Component
GO:0005615 extracellular space
GO:0016020 membrane
GO:0030670 phagocytic vesicle membrane
GO:0042612 MHC class I protein complex
GO:0098553 lumenal side of endoplasmic reticulum membrane

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Biological Process
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Cellular Component
External links
PDB RCSB:5j6h, PDBe:5j6h, PDBj:5j6h
PDBsum5j6h
PubMed27385590
UniProtP01898|HA10_MOUSE H-2 class I histocompatibility antigen, Q10 alpha chain (Gene Name=H2-Q10)

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