Structure of PDB 5ixm Chain A

Receptor sequence
>5ixmA (length=543) Species: 632 (Yersinia pestis) [Search protein sequence]
SMSGFLIPNAKFTSNNGFEFLLPYYWNIAPNFDATITPHYMERRGLQWQN
EFRYLLAPGSGTMALDWLPNDRIYTGPDGTDKNATRWLYYWGHSGVMDQV
WRFNINYTRVSDPAYFTDLTSQYGSTTDGYATQIFTAGYANENWNATLSS
KQFQVFTAAGNSNAYRAQPQLDMNYYKNDVGPFDMHVYGQAAKFTSVNPT
NPEASRFHIEPTVNLPLSNSWGSINTEAKLLATHYQQDIPASFADNASNP
KLKDSVNRVLPQFKVDGKVVFDRSMDWATGFTQTLEPRAQYLYVPYRNQD
DIYIYDTTLMQSDYSGLFRDRTYSGLDRIASANQVSTGLTSRIYDDARVE
RFNVSVGQIYYFSRSRTGNTENATGSLVWAGDTFWRINDQLGLKGGAQYD
TRLGSLTLGNAIMEYRKDADRMIQLNYRYASPKYIQAAVPKVYNPDYQQG
ISQVGTTASWPIADRWAIVGAYYYDTKAKQPASQLVGLQYNTCCWAVNLG
YERKITGWNAQGQTSKYDNKIGFNIEGTAQMLNSGILPYQSAF
3D structure
PDB5ixm Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens.
ChainA
Resolution2.746 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 C8E A F181 A226 F183 A228
BS02 C8E A F279 R349 N391 D392 F281 R351 N388 D389
BS03 C8E A Y358 F360 Y360 F362
BS04 C8E A T386 G398 G399 L409 G412 Y432 T383 G395 G396 L406 G409 Y429
BS05 C8E A Y289 F360 Y291 F362
BS06 C8E A S216 G265 V267 S218 G267 V269
Gene Ontology
Biological Process
GO:0061024 membrane organization
Cellular Component
GO:0019867 outer membrane

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5ixm, PDBe:5ixm, PDBj:5ixm
PDBsum5ixm
PubMed27161977
UniProtQ8ZIK3|LPTD_YERPE LPS-assembly protein LptD (Gene Name=lptD)

[Back to BioLiP]