Structure of PDB 5iw0 Chain A

Receptor sequence
>5iw0A (length=306) Species: 9606 (Homo sapiens) [Search protein sequence]
EFVPPPECPVFEPSWEEFTDPLSFIGRIRPLAEKTGICKIRPPKDWQPPF
ACEVKSFRFTPRVQRLNELEAMREAFGFEQAVREYTLQSFGEMADNFKSD
YFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSKDFGSGFPVKD
GRRKILPEEEEYALSGWNLNNMPVLEQSVLAHINKVPWLYVGMCFSSFCW
HIEDHWSYSINYLHWGEPKTWYGVPSHAAEQLEEVMRELAPELFESQPDL
LHQLVTIMNPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAE
AVNFCT
3D structure
PDB5iw0 Structural Basis for KDM5A Histone Lysine Demethylase Inhibition by Diverse Compounds.
ChainA
Resolution1.63 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) Y472 H483 E485 H571 A583
Catalytic site (residue number reindexed from 1) Y190 H201 E203 H289 A301
Enzyme Commision number 1.14.11.67: [histone H3]-trimethyl-L-lysine(4) demethylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 6EP A R73 Q75 Y409 A411 Y472 F480 H483 E485 K501 W503 H571 R62 Q64 Y133 A135 Y190 F198 H201 E203 K219 W221 H289 MOAD: Kd=0.06uM
PDBbind-CN: -logKd/Ki=7.22,Kd=0.06uM
BindingDB: IC50=<100nM,EC50=90nM
BS02 AKG A F480 C481 H483 Q535 L536 F198 C199 H201 Q253 L254
BS03 MN A H483 E485 H571 H201 E203 H289
External links
PDB RCSB:5iw0, PDBe:5iw0, PDBj:5iw0
PDBsum5iw0
PubMed27427228
UniProtP29375|KDM5A_HUMAN Lysine-specific demethylase 5A (Gene Name=KDM5A)

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