Structure of PDB 5iva Chain A

Receptor sequence
>5ivaA (length=579) Species: 208964 (Pseudomonas aeruginosa PAO1) [Search protein sequence]
IDDRRQSGFLPPSFSSTSDTGFTLVTPYYFNLAPNYDATLYPRYMAKRGM
MLEGEFRYLTHSSEGIVNAAYLNDKDDHREGFPDYSKDRWLYGLKNTTGL
DSRWLAEVDYTRISDPYYFQDLDTDLGVGSTTYVNQRGTLTYRGDTFTGR
LNAQAYQLATTTDVTPYDRLPQITFDGFLPYNPGGMQFTYGTEFVRFDRD
LDENIYFNDDGSIRGKRPDASLQGLARATGDRMHLEPGMSLPMTRSWGYV
TPTLKYLYTKYDLDLDSQGKTDLNKRDESFDSNQDRSLPLVKVDSGLYFD
RDTTFAGTPFRQTLEPRAMYLYVPYKDQDSLPVFDTSEPSFSYDSLWREN
RFTGKDRIGDANQLSLGVTSRFIEENGFERASISAGQIYYFRDRRVQLPG
LTEKDLKRLNLDPSGLDNDSWRSPYAFAGQYRFNRDWRINSDFNWNPNTS
RTESGSAIFHYQPEVDPGKVVNVGYRYRADARRFDSSRGTFRYGNENDII
KQHDFSVIWPLVPQWSVLARWQYDYNKNRTLEAFGGFEYDSCCWKLRLIN
RYWLDVDDDAFLVQSEKADRGIFLQIVLK
3D structure
PDB5iva Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens.
ChainA
Resolution2.988 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 C8E A W559 Y561 W521 Y523
BS02 C8E A F575 N588 R608 F537 N550 R570
BS03 C8E A Y148 Q174 Y110 Q136
BS04 C8E A A571 Y590 A533 Y552
BS05 C8E A Y358 Y360 N400 F429 Y320 Y322 N362 F391
BS06 C8E A P275 Y294 P237 Y256
Gene Ontology
Biological Process
GO:0015920 lipopolysaccharide transport
GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly
GO:0061024 membrane organization
Cellular Component
GO:0009279 cell outer membrane
GO:0019867 outer membrane

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Biological Process
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Cellular Component
External links
PDB RCSB:5iva, PDBe:5iva, PDBj:5iva
PDBsum5iva
PubMed27161977
UniProtQ9I5U2|LPTD_PSEAE LPS-assembly protein LptD (Gene Name=lptD)

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