Structure of PDB 5irb Chain A

Receptor sequence

>5irbA (length=313) Species: 178399 (Marinomonas primoryensis) [Search protein sequence]

LNQSPLLINLDIDPVTGDSVINAAEAGGTVTLTGVVNGDVFSSGVVTLVI
NGVTYSTNVNPNGTWSVSVAGSDLSADSDRIVDASVVVTNGAGQQGTADS
TESFIVKTSSRATIRVNSITSDDVVNAEESNSTITVSGRVGLDASAGDTV
SMTINGTLYTTVVLANKTWSVGVSGSDLAQDNSFQVSVTGQDSAGNPYAG
TTTSTHTVDTSADAGTVTVNAITSDDVINASEAAGTVAVSGTATGGDIAE
GDTVTLEINGETYTTTVDANGEWSVDVAGSDLAADTAFDAVVTSSDAAGN
TVDTTGSSTHTVD

3D structure

PDB

5irb Structure of a 1.5-MDa adhesin that binds its Antarctic bacterium to diatoms and ice.

Chain

Resolution

2.0 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	CA	A	T197 D199 V201 E206	T16 D18 V20 E25
BS02	CA	A	D390 S392 D477	D209 S211 D296
BS03	CA	A	D407 T490	D226 T309
BS04	CA	A	T301 D303 V305 E310	T120 D122 V124 E129
BS05	CA	A	D304 T386	D123 T205
BS06	CA	A	D258 D260 I262	D77 D79 I81
BS07	CA	A	D362 S364	D181 S183
BS08	CA	A	T404 D406 V408 E413	T223 D225 V227 E232
BS09	CA	A	D466 A468	D285 A287

External links

PDB	RCSB:5irb, PDBe:5irb, PDBj:5irb
PDBsum	5irb
PubMed	28808685
UniProt	A1YIY2

[Back to BioLiP]