Structure of PDB 5ie3 Chain A

Receptor sequence
>5ie3A (length=504) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
MDSDTLSGLLENVAKKFPDRRALSVSGKFNLTHARLHDLIERAASRLVSD
AGIKPGDVVALTFPNTVEFVIMFLAVIRARATAAPLNAAYTAEEFEFYLS
DSDSKLLLTSKEGNAPAQEAASKLKISHVTATLLDAGSDLVLSVADATEL
VNHPDDGALFLHTSGTTSRPKGVPLTQLNLASSVKNIKAVYKLTESDSTV
IVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRFSATTFWPDMKKYNATWY
TAVPTIHQIILDRHASHPETEYPKLRFIRSCSASLAPVILSRLEEAFGAP
VLEAYAMTEATHLMSSNPLPEEGPHKPGSVGKPVGQEMAILNEKGEIQEP
NNKGEVCIRGPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDTDGYLHLV
GRIKELINRGGEKISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAV
IPREGTTVTEEDIKAFCKKNLAAFKVPKRVFITDNLPKTASGKIQRRIVA
QHFL
3D structure
PDB5ie3 Crystal Structures of Arabidopsis thaliana Oxalyl-CoA Synthetase Essential for Oxalate Degradation
ChainA
Resolution1.9 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) T170 S190 H214 T315 E316 N415 K420 K500
Catalytic site (residue number reindexed from 1) T163 S183 H207 T308 E309 N408 K413 K493
Enzyme Commision number 6.2.1.8: oxalate--CoA ligase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP A S171 S289 A290 S291 Y312 A313 M314 T315 D394 L406 R409 K500 S164 S282 A283 S284 Y305 A306 M307 T308 D387 L399 R402 K493
BS02 OXD A V215 S289 A313 M314 H319 K500 V208 S282 A306 M307 H312 K493 MOAD: Kd=18.2uM
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0050203 oxalate-CoA ligase activity
Biological Process
GO:0006952 defense response
GO:0010030 positive regulation of seed germination
GO:0010214 seed coat development
GO:0033611 oxalate catabolic process
GO:0050832 defense response to fungus
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0009506 plasmodesma
GO:0009507 chloroplast
GO:0009570 chloroplast stroma
GO:0048046 apoplast

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5ie3, PDBe:5ie3, PDBj:5ie3
PDBsum5ie3
PubMed27326693
UniProtQ9SMT7|4CLLA_ARATH Oxalate--CoA ligase (Gene Name=AAE3)

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