Structure of PDB 5i9h Chain A

Receptor sequence

>5i9hA (length=368) Species: 32644 (unidentified) [Search protein sequence]

LRRGVAPTVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTL
IDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAKLEALKLF
EEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTY
TTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYTTLIDGLCKAGKLDE
ALKLFEEMVEKGIKPDVVTYNTLIDGLCKAGKLDEALKLFEEMVEGIKPD
VVTYNTLIDGLCKAGKLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCKAG
KLDEALKLFEEMVEKGIKPDVVTYNTLIDGLCGKLDEALKLFEEMVEKGI
KPELTYRRVVESYCRAEE

3D structure

PDB

5i9h Structural basis for specific single-stranded RNA recognition by designer pentatricopeptide repeat proteins.

Chain

Resolution

2.504 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	A	V52 N55 D59 K63 N90 T91 D94 K98 N125 T126 D129 K133 V157 N160 T161 D164 K168 V192 T195 T196 D199 K203 D225 V227 T230 T231 D234 K238 D260 V262 N265 T266 D269 V297 N300 T301 D304 K308 V332 N335 T336 D339 K343 V367 N370 T371 L402 R406	V10 N13 D17 K21 N48 T49 D52 K56 N83 T84 D87 K91 V113 N116 T117 D120 K124 V148 T151 T152 D155 K159 D181 V183 T186 T187 D190 K194 D216 V218 N221 T222 D225 V252 N255 T256 D259 K263 V287 N290 T291 D294 K298 V322 N325 T326 L354 R358

External links

PDB	RCSB:5i9h, PDBe:5i9h, PDBj:5i9h
PDBsum	5i9h
PubMed	27088764

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