Structure of PDB 5i3z Chain A

Receptor sequence
>5i3zA (length=325) Species: 556 (Dickeya chrysanthemi) [Search protein sequence]
KLPNIVILATGGTIAGSAATGTQTTGYKAGALGVDTLINAVPEVKKLANV
KGEQFSNMASQNMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESA
YFLHLTVKSDKPVVFVAAMRPATAISADGPMNLLEAVRVAGDKQSRGRGV
MVVLNDRIGSARYITKTNASTLDTFKANEEGYLGVIIGNRIYYQNRIDKL
HTTRSVFDVRGLTSLPKVDILYGYQDDPEYLYDAAIQHGVKGIVYAGMGA
GSVSVRGIAGMRKAMEKGVVVIRSTRTGNGIVPPDEELPGLVSDSLNPAH
ARILLMLALTRTSDPKVIQEYFHTY
3D structure
PDB5i3z Design and Characterization of Erwinia Chrysanthemi l-Asparaginase Variants with Diminished l-Glutaminase Activity.
ChainA
Resolution2.05 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) T15 Y29 T95 D96 K168
Catalytic site (residue number reindexed from 1) T13 Y27 T93 D94 K166
Enzyme Commision number 3.5.1.1: asparaginase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ASP A T15 A61 S62 Q63 G94 T95 D96 T13 A59 S60 Q61 G92 T93 D94
Gene Ontology
Molecular Function
GO:0004067 asparaginase activity
GO:0016787 hydrolase activity
Biological Process
GO:0006520 amino acid metabolic process
GO:0006528 asparagine metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5i3z, PDBe:5i3z, PDBj:5i3z
PDBsum5i3z
PubMed27354283
UniProtP06608|ASPG_DICCH L-asparaginase (Gene Name=ansB)

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