Structure of PDB 5i2b Chain A

Receptor sequence
>5i2bA (length=167) Species: 396596 (Burkholderia ambifaria IOP40-10) [Search protein sequence]
HMIREILKMGDPRLLEVAKPVAQFDTPELHEIVADMFETMHHANGAGLAA
PQIGIGLQIIIFGFNRYPDAPPVPETVLINPKLEYMPPDMEEGWEGCLSV
PGMRGVVSRYAKVRYSGYDQFGAKIDRVAEGFHARVVQHEYDHLIGKLYP
MRITDFTRFGFTEVLFP
3D structure
PDB5i2b Crystal structure of a peptide deformylase from Burkholderia ambifaria with actinonin
ChainA
Resolution1.7 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) G46 Q51 C99 L100 H141 E142 H145
Catalytic site (residue number reindexed from 1) G47 Q52 C97 L98 H139 E140 H143
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A C99 H141 H145 C97 H139 H143
BS02 BB2 A G44 A45 G46 Q51 W96 G98 C99 R106 H141 E142 H145 G45 A46 G47 Q52 W94 G96 C97 R104 H139 E140 H143
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5i2b, PDBe:5i2b, PDBj:5i2b
PDBsum5i2b
PubMed
UniProtB1FPK4

[Back to BioLiP]