Structure of PDB 5hv1 Chain A

Receptor sequence
>5hv1A (length=847) Species: 1639 (Listeria monocytogenes) [Search protein sequence]
MKPYVLKFQEIRPHSEALVGGKGMNLGACSNIEGVHVPAGFCLTTEAYKR
TLAENNEFTQLLQRLSSLKTSDMDAIREISETIRTLIQHTQIPSEIASYM
DATLLDVGGYEMPFAVRSSATAEDLPHASFAGQHDTYLNIIGKDALLQHI
SMCWASLFTERAIIYRIQNQFDHRKVQLAVVIQQMISPEASGILFTADPI
TSNRKSLSIDASFGLGEALVSGLVSADSYTVRENTITNKIIATKKLAIYS
LKEGGTETRILEKSQQTKQTLTDQQIIQLAKLGRKIEAYFGKPQDIEWCL
AEGAFYIVQSRPITTLYPIPEVNEPGNRVYISVAHQQMMTDAMKPLGLSF
YLMTTPATMYTAGGRLFVDITQSLSAKVSRDMMVNSLGQSDPLIKDALLT
VINKKGFLPSIPDSSSVFELVRNSENSIKHLKQSIETKSGSDLFDFIVED
LEELKRVLFNPTSIDAIMAGMDASAWLNEHIYQWLGEKNVADKLSESAPN
NITSQMGLELLDVADVIRPYPAVRAYLEQTKNPDFMNELATLEGGAETKK
ALEDYLQKYGMRCAGEIDLTKTRWIENPLTLIPLILSNIKNFDSSASMHK
FAQGEKEAFHKEQEILRRLQELPDGEQKAMETKEKIDILRHFIGYREYPK
YGMINRYFIYKLALLRAGEQLVKDGILQEHEDIYFLYFEELREVVRTGQV
DYELINARKRDFATFEKLTPPRILTSDGEMINGEYKRENLPKDAILGLPV
SSGTVEGRARVILEMEKADLEDGDILVTAYTDPSWTPAFVSIKGLVTEVG
GLMTHGAVIAREYGLPAVVGVENATTIIKDGQQIRINGTEGYIEILD
3D structure
PDB5hv1 Structural basis of rifampin inactivation by rifampin phosphotransferase
ChainA
Resolution3.103 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ANP A K22 R117 F130 A131 G132 T136 L138 G216 E217 V220 E297 Q309 R311 K22 R117 F130 A131 G132 T136 L138 G216 E217 V220 E297 Q309 R311
BS02 RFP A Y351 T355 P356 V368 F479 I487 Y351 T355 P356 V368 F459 I467 PDBbind-CN: -logKd/Ki=4.10,Kd=79.4uM
BS03 MG A Q309 R311 Q309 R311
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 21:03:07 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5hv1', asym_id = 'A', title = 'Structural basis of rifampin inactivation by rifampin phosphotransferase'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5hv1', asym_id='A', title='Structural basis of rifampin inactivation by rifampin phosphotransferase')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0005524,0016301,0016310,0016772', uniprot = '', pdbid = '5hv1', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005524,0016301,0016310,0016772', uniprot='', pdbid='5hv1', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>