Structure of PDB 5hrk Chain A

Receptor sequence
>5hrkA (length=174) Species: 10497 (African swine fever virus) [Search protein sequence]
MLTLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREEKMLNDV
DLLIIVPEKKLLKHVLPNIRIKGLSFSVKVCGERKCVLFIEWEKKTYQLD
LFTALAEEKPYAIFFFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQTLVP
LKITTEKELIKELGFTYRIPKKRL
3D structure
PDB5hrk The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
ChainA
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A V80 C81 G82 E83 R84 R127 Y140 V80 C81 G82 E83 R84 R127 Y140
BS02 dna A R125 T166 R168 R125 T166 R168
BS03 DGT A G38 S39 R42 N48 D49 D51 F116 T117 G118 V120 G38 S39 R42 N48 D49 D51 F116 T117 G118 V120
BS04 MN A D49 D51 D49 D51
BS05 MN A D49 D51 D100 D49 D51 D100
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006259 DNA metabolic process
GO:0006281 DNA repair
GO:0006303 double-strand break repair via nonhomologous end joining
GO:0071897 DNA biosynthetic process
Cellular Component
GO:0044423 virion component

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5hrk, PDBe:5hrk, PDBj:5hrk
PDBsum5hrk
PubMed
UniProtP42494|DPOLX_ASFB7 Repair DNA polymerase X (Gene Name=Ba71V-97)

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