Structure of PDB 5hrd Chain A

Receptor sequence
>5hrdA (length=176) Species: 10497 (African swine fever virus) [Search protein sequence]
GGMLTLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREEKMLN
DVDLLIIVPEKKLLKHVLPNIRIKGLSFSVKVCGERKCVLFIEWEKKTYQ
LDLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQTL
VPLKITTEKELIKELGFTYRIPKKRL
3D structure
PDB5hrd The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
ChainA
Resolution1.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A D51 K85 D100 H115 F116 V120 D53 K87 D102 H117 F118 V122
BS02 dna A V80 G82 R84 I124 R127 A128 K131 K136 L137 N138 Q139 Y140 V82 G84 R86 I126 R129 A130 K133 K138 L139 N140 Q141 Y142
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006259 DNA metabolic process
GO:0006281 DNA repair
GO:0006303 double-strand break repair via nonhomologous end joining
GO:0071897 DNA biosynthetic process
Cellular Component
GO:0044423 virion component

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5hrd, PDBe:5hrd, PDBj:5hrd
PDBsum5hrd
PubMed
UniProtP42494|DPOLX_ASFB7 Repair DNA polymerase X (Gene Name=Ba71V-97)

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