Structure of PDB 5h05 Chain A

Receptor sequence
>5h05A (length=497) Species: 408172 (marine metagenome) [Search protein sequence]
HMCDSALTAQANDLRIYQVMVESFVNGDDAIGHGTGYGTSHHKGDLQGII
DSLDYIESLGMNAIWLTPIFDSIPVEGQDHWADRLDATGYFTSNYFAVDP
RFGTMEQAKELVEKAHEKGLYVFFDGVFGHHKDNVVPSPEGRLPVGENNP
VSYPESLAFYQEVATFWIEELKIDGWRLDQAYQVPTEAWTAIRASVDEAS
KSVTYVNSKGEAVNPLGYMVAQIWNNENYIKETGYGAEGEPALCSAFDFP
VRYRVVETFAANENGIGNKGGKWLDEGMNLHRLYPSHAQPNLMLGNHDLV
RFGDLLQRGNIASPEQAEYWERHKAALSFQAAYSGPITLYYGEEIGDELE
GYAQKVEQDCAVQGLCDDHVARTSANIDGLTVNLNEKQRDLKQYVSQLMT
LRAAHPALSRGERTNIVANETVYIDHKQADDDALIYMVSTTADQDTVELK
ASDIASDGQLVDLLTGKVHSAINGEYQISLAPFEAKFLLIETPSASG
3D structure
PDB5h05 Crystal structure of a raw-starch-degrading bacterial alpha-amylase belonging to subfamily 37 of the glycoside hydrolase family GH13
ChainA
Resolution2.55 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLC A Y89 H129 D178 Q179 Q221 H296 D297 Y90 H130 D179 Q180 Q222 H297 D298
BS02 GLC A Y89 F90 R371 Y90 F91 R372
BS03 GLC A Y36 D367 H368 Y37 D368 H369
BS04 CA A N25 D27 D28 I30 K42 D44 N26 D28 D29 I31 K43 D45
BS05 CA A D303 Q306 E347 L348 Y351 D304 Q307 E348 L349 Y352
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 17:12:10 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5h05', asym_id = 'A', title = 'Crystal structure of a raw-starch-degrading bact...family 37 of the glycoside hydrolase family GH13 '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5h05', asym_id='A', title='Crystal structure of a raw-starch-degrading bact...family 37 of the glycoside hydrolase family GH13 ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0005975', uniprot = '', pdbid = '5h05', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005975', uniprot='', pdbid='5h05', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>