Structure of PDB 5gzm Chain A

Receptor sequence
>5gzmA (length=355) Species: 38300 (Streptomyces pristinaespiralis) [Search protein sequence]
RGSHMETWVLGRRDVAEVVAAVGRDELMRRIIDRLTGGLAEIGRGERHLS
PLRGGLERSEPVPGIWEWMPHREPGDHITLKTVGYSPANPARFGLPTILG
TVARYDDTTGALTALMDGVLLTALRTGAASAVASRLLARPDSHTLGLIGT
GAQAVTQLHALSLVLPLQRALVWDTDPAHRESFARRAAFTGVSVEIAEPA
RIAAEADVISTATSVAVGQGPVLPDTGVREHLHINAVGADLVGKTELPLG
LLERAFVTADHPEQALREGECQQLSADRLGPQLAHLCADPAAAAGRQDTL
SVFDSTGFAFEDALAMEVFLEAAAERDLGIRVGIEHHPGDALDPYALQPL
PLPLA
3D structure
PDB5gzm Cyclodeaminase_PA
ChainA
Resolution1.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 4.3.1.12: ornithine cyclodeaminase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAD A Y81 T93 I94 T122 G147 A148 Q149 D170 T171 H175 A208 T209 S210 V218 V233 G234 A235 S301 T302 G303 Y85 T97 I98 T126 G151 A152 Q153 D174 T175 H179 A212 T213 S214 V222 V237 G238 A239 S305 T306 G307
BS02 YCP A R49 K77 R121 A235 T302 G303 R53 K81 R125 A239 T306 G307
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0008473 ornithine cyclodeaminase activity
GO:0016829 lyase activity
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5gzm, PDBe:5gzm, PDBj:5gzm
PDBsum5gzm
PubMed
UniProtD9UBW0

[Back to BioLiP]