Structure of PDB 5gmy Chain A

Receptor sequence
>5gmyA (length=848) Species: 224325 (Archaeoglobus fulgidus DSM 4304) [Search protein sequence]
ESWFKKYWHLSVLVIAALISVKLRILNPWNSVFTWTVRLGGNDPWYYYRL
IENTIHNFPHRIWFDPFTYYPYGSYTHFGPFLVYLGSIAGIIFSATSGES
LRAVLAFIPAIGGVLAILPVYLLTREVFDKRAAVIAAFLIAIVPGQFLQR
SILGFNDHHIWEAFWQVSALGTFLLAYNRWKGHDLSHNLTARQMAYPVIA
GITIGLYVLSWGAGFIIAPIILAFMFFAFVLAGFVNADRKNLSLVAVVTF
AVSALIYLPFAFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVG
FFERVGLGRKGMPLAVIVLTALIMGLFFVIPKGGALTIAEVYPFFFTHNG
EFTLTNAVLHFGALFFFGMAGILYSAYRFLKRRSFPEMALLIWAIAMFIA
LWGQNRFAYYFAAVSAVYSALALSVVFDKLHLYRALENAIGARNKLSYFR
VAFALLIALAAIYPTYILADAQSSYAGGPNKQWYDALTWMRENTPDGEKY
DEYYLQLYPTPQSNKEPFSYPFETYGVISWWDYGHWIEAVAHRMPIANPF
QAGIGNKYNNVPGASSFFTAENESYAEFVAEKLNVKYVVSDIEMETCKYY
AMAVWAEGDLPLAEKYYGGYFYYSPTGTFGYANSQWDIPLNSIIIPLRIP
SELYYSTMEAKLHLFDGSGLSHYRMIYESDYPAEWKSYSSQVNLNNESQV
LQTALYEAVMRARYGVSPTMGTQEVLYKYAYTQLYEKKMGIPVKIAPSGY
VKIFERVKGAVVTGKVSANVTEVSVNATIKTNQNRTFEYWQTVEVKNGTY
TVVLPYSHNSDYPVKPITPYHIKAGNVVKEITIYESQVQNGEIIQLDL
3D structure
PDB5gmy Tethering an N-Glycosylation Sequon-Containing Peptide Creates a Catalytically Competent Oligosaccharyltransferase Complex
ChainA
Resolution3.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.4.99.21: dolichyl-phosphooligosaccharide-protein glycotransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A D47 Q153 F159 T357 A359 E360 W550 W551 D552 C617 K618 D43 Q149 F155 T337 A339 E340 W530 W531 D532 C597 K598
BS02 MG A D47 D161 H163 D43 D157 H159
Gene Ontology
Molecular Function
GO:0004576 oligosaccharyl transferase activity
GO:0016757 glycosyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006486 protein glycosylation
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5gmy, PDBe:5gmy, PDBj:5gmy
PDBsum5gmy
PubMed27997792
UniProtO29867|AGLB3_ARCFU Dolichyl-phosphooligosaccharide-protein glycotransferase 3 (Gene Name=aglB3)

[Back to BioLiP]